How to plot a Heatmap in Rstudio, the easy way - Part 1/3

Published: 17 January 2019
on channel: LiquidBrain Bioinformatics

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Download script here:
https://github.com/brandonyph

Part 2- K Means Clustering and Sub-cluster Determination
   • K Means Clustering and Sub-cluster De...

Part 3 - Heatmap Generation and Exporting plots as hi-res PNG
   • Heatmap Generation and Exporting plot...

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Using the results from a typical RNA-Seq experiment, how could one conduct a hierarchical clustering analysis on the column and the row of the data? How could we use an external data source such as a CSV file prepared in Microsoft Excel? without any knowledge in R or Rstudio, is it possible to complete the plot within an hour? Yes, yes yes and maybe

R package and R studio download links (for windows)
https://cran.r-project.org/bin/window...
https://www.rstudio.com

More information:
bit.ly/Brandon_Yeo

Literature
https://www.rdocumentation.org/packag...
https://sebastianraschka.com/Articles...
https://flowingdata.com/2010/01/21/ho...
   / joshstarmer

Email: [email protected]
Website: https://www.liquidbrain.org/videos
Patreon:   / liquidbrain